Publications

Akhmad Subkhan, Ainul Fitria Mahmudah, Shintawati Shintawati, Widi Astuti, Himawan Tri Bayu Murti Petrus, Matin Nuhamunada, Yekti Asih Purwestri (2025). Characterization and genomic profiling of potential iron-reducing bacteria isolated from red mud for bioremediation. Wydawnictwo Naukowe Gabriel Borowski (WNGB).

Lijie Song, Matin Nuhamunada, Tilmann Weber, Ákos T Kovács (2025). Unlocking the biosynthetic potential of Paenibacilli through a genus-wide exploration of gene clusters for secondary metabolite production.

Lijie Song, Lasse Johan Dyrbye Nielsen, Xinming Xu, Omkar Satyavan Mohite, Matin Nuhamunada, Zhihui Xu, Rob Murphy, Kasun Bodawatta, Michael Poulsen, Mohamed Hatha Abdulla, Eva C Sonnenschein, Tilmann Weber, Ákos T Kovács (2024). Expanding the genome information on Bacillales for biosynthetic gene cluster discovery. Nature Publishing Group.

Caner Bağcı, Matin Nuhamunada, Hemant Goyat, Casimir Ladanyi, Ludek Sehnal, Kai Blin, Satria a Kautsar, Azat Tagirdzhanov, Alexey Gurevich, Shrikant Mantri, Christian Von Mering, Daniel Udwary, Marnix H Medema, Tilmann Weber, Nadine Ziemert (2024). BGC Atlas: a web resource for exploring the global chemical diversity encoded in bacterial genomes. Oxford University Press (OUP).

Tue Sparholt Jørgensen, Omkar S Mohite, Eva B Sterndorff, Maria Alvarez-Arevalo, Kai Blin, Thomas J Booth, Pep Charusanti, David Faurdal, Troels Ø Hansen, Matin Nuhamunada, Anna-Sophie Mourched, Bernhard Ø Palsson, Tilmann Weber (2024). A treasure trove of 1034 actinomycete genomes. Oxford University Press (OUP).

Matin Nuhamunada, Omkar S Mohite, Patrick v Phaneuf, Bernhard O Palsson, Tilmann Weber (2024). BGCFlow: systematic pangenome workflow for the analysis of biosynthetic gene clusters across large genomic datasets. Oxford University Press (OUP).

Matin Nuhamunada (2024). Advancing Natural Products Genome Mining through Large Scale Data-Driven Approaches. Technical University of Denmark.

Faris Muhammad Gazali, Nastiti Wijayanti, Mohamad Saifudin Hakim, Endah Supriyati, Eggi Arguni, Marselinus Edwin Widyanto Daniwijaya, Titik Nuryastuti, Matin Nuhamunada, Rahma Nabilla, Sofia Mubarika Haryana, Tri Wibawa (2023). The high mutation rate at the D614G hotspot-furin cleavage site region increases the priming efficiency of the Spike protein by furin protease: analysis of Indonesian SARS-CoV-2 G614 variants obtained during the early COVID-19 pandemic.

Eftychia E Kontou, Axel Walter, Oliver Alka, Julianus Pfeuffer, Timo Sachsenberg, Omkar S Mohite, Matin Nuhamunada, Oliver Kohlbacher, Tilmann Weber (2023). UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis.

Roberto Sánchez-Navarro, Matin Nuhamunada, Omkar S Mohite, Kenneth Wasmund, Mads Albertsen, Lone Gram, Per H Nielsen, Tilmann Weber, Caitlin M Singleton (2022). Long-read metagenome-assembled genomes improve identification of novel complete biosynthetic gene clusters in a complex microbial activated sludge ecosystem. American Society for Microbiology.

Nastiti Wijayanti, Faris Muhammad Gazali, Endah Supriyati, Mohamad Saifudin Hakim, Eggi Arguni, Marselinus Edwin Widyanto Daniwijaya, Titik Nuryastuti, Matin Nuhamunada, Rahma Nabilla, Sofia Mubarika Haryana, Tri Wibawa (2022). Evolutionary dynamics of SARS-CoV-2 circulating in Yogyakarta and Central Java, Indonesia: sequence analysis covering furin cleavage site (FCS) region of the spike protein.

Faris Muhammad Gazali, Matin Nuhamunada, Rahma Nabilla, Endah Supriyati, Mohamad Saifudin Hakim, Eggi Arguni, Edwin Widyanto Daniwijaya, Titik Nuryastuti, Sofia Mubarika Haryana, Tri Wibawa, Nastiti Wijayanti (2021). Detection of SARS-CoV-2 spike protein D614G mutation by qPCR-HRM analysis.

Muhammad Adnan, Matin Nuhamunada, Lisna Hidayati, Nastiti Wijayanti (2020). In silico vaccine design against dengue virus type 2 envelope glycoprotein. Bogor Agricultural University.

Matin Nuhamunada, Gregorius Altius Pratama, Setianing Wikanthi, Mohamad Khoirul Anam, R Ludhang Pradhipta Rizki, Nastiti Wijayanti (2018). Data Mining and Comparative Analysis of Human Skin Microbiome from EBI Metagenomics Database. 2018 1st International Conference on Bioinformatics, Biotechnology, and Biomedical Engineering - Bioinformatics and Biomedical Engineering.

Parvez Alam, Danish Otieno, Matin Nuhamunada, Roselyn Anyango, Jared Odoyo, John Odhiambo, Kenneth Onyango (2016). The toughest recorded spider egg case silks are woven into composites with tear-resistant architectures.

Nelson Bighetti, Robert Ford (2015). An example journal article. Journal of Source Themes, 1(1).

Eko Agus Suyono, Winarto Haryadi, Muhammad Zusron, Matin Nuhamunada, Sri Rahayu, Andhika Puspito Nugroho (2015). The effect of salinity on growth, dry weight and lipid content of the mixed microalgae culture isolated from Glagah as biodiesel substrate. David Publishing Company.